DNA BASER - affordable sequence assembly
DNA Baser is an affordable alternative for assembly of DNA sequences and generation of contigs. File formats supported are abi, scf and seq (or FASTA). Chromatograms of the assembled sequences are displayed in a synchronized format with the generated contig. ... By using a built-up database of primer and vector sequences, that can be edited/upgraded by the user, DNABaser can be set to automatically trim the vector sequence out of the final contig. ... The contig is automatically saved in FASTA format, in the same directory with the original trace files.
http://www.dnaBaser.com/cgi-bin/click_counter/click.php?id=2 - 1Mb - Download - Screenshot