GENOM 2005
Genom 2005 is a feature rich and user friendly application for analysing array-experiments (e. g. from provider Affymetrix). It includes normalisation of raw data, additional gene information official gene names, location, function prediction, sequences, database references (GeneOntology,... ), an integrated pathway editor (user friendly drag and drop operation), function prediction, Sequence analysis and many things more. ... ), multiple analysis methods (cluster, Support-Vector-Machine, statistical methods), automatic pathway mapping (BioCarta, GenMAPP...
http://gsa.nothingreal.biz/genom2005_demo.zip - 16Mb - Download - Screenshot

Advanced Pathway Painter
This freeware program visualizes pathways. The user has the possibility to display any kind of quantitative data from gene and protein experiments directly within the pathways (colours represent the value). The linking between the pathway items and the experiment data is done over the gene or... This program includes only a small part of the functions from the software GENOM 2005. ... Furthermore the user has a quick overview on the gene/protein with the collected links in the web-interface (direct links).
http://gsa.nothingreal.biz/app_setup.exe - 2Mb - Download - Screenshot